Databases available for BLAST search


Peptide Sequence Databases


nr
All non-redundant protein sequences

trembl
the last major release of the TREMBL protein sequences from UNIPROT

swissprot
the last major release of the SWISS-PROT protein sequences database from UNIPROT

refpro
translated RefSeq mRNA sequences from human, mouse, rat, zebra fish

env_nr
Environmental sample protein sequences

month.aa
All new or revised GenBank protein sequences in the last 30 days.

pataa
patented protein sequences

pdbaa
protein sequences derived from the 3-dimensional structure Brookhaven Protein Data Bank

pdbaanew
new protein sequences derived from the 3-dimensional structure Brookhaven Protein Data Bank


Nucleotide Sequence Databases


nt
All Non-redundant nucleotide sequences (but no EST, STS, GSS, or HTG sequences)

htg
unfinished High Throughput Genomic Sequences

gss
Genome Survey Sequence, includes single-pass genomic data, exon-trapped sequences, and Alu PCR sequences.

month.nt
All new or revised nucleotide sequences released in the last 30 days

est_human
human EST sequences

est_mouse
mouse EST sequences

est_others
EST sequences from other species

env_nt
Environmental sample nucleotide sequences

pdbnt
nucleotide sequences derived from the 3-dimensional structure Brookhaven Protein Data Bank

refnuc
RefSeq mRNA sequences from human, mouse, rat, zebra fish

month.nt
All new or revised nucleotide sequences in the last 30 days

patnt
patented nucleotide sequences