command line:

mview -in plain -css on -srs on -html head -ruler on -coloring consensus -threshold 80 -consensus on -con_coloring any PP2C.txt

produced:

Identities computed with respect to: (1) swiss|P34221|YBF6_YEAST
Colored by: consensus/80% and sequence
                                    1 [        .         .         .         .         :         .         .         .         .         1         .         .         .         .         :         .         .         .         .         2         .         .         .         .         :      ] 257


 1 swiss|P34221|YBF6_YEAST 100.0%     ----RMSMEDAHIVEPNLL----LAFYGIFDGHG-----GSSVAEFCGSKMISILKK----SGCTATVILVSQ----KLLICANSGDSRTVLST-----GGNSKAMSFDHKPTLL-----SEKSRIVAADGFVEMD-----RVNGNLALSRAIGDFEFKS----VPDIICHNLN-----YDEDEFVILACDGIWDCLT-----SQECVDLVHYGIS----LSDISSRIVDVCCSPT----GCDNMSISIVALL----    
 2 swiss|P39966|YER9_YEAST  79.5%     ----RMSMEDSHILEPNVL----IAFYGIFDGHG-----GAKVAEYCGNKIVEILQE----SGCTATSILVSK----NLLVCGNAGDSRTVLAT-----DGNAKALSYDHKPTLA-----SEKSRIVAADGFVEMD-----RVNGNLALSRAIGDFEFKS----VPDILEHSLD-----YDRDEFVILACDGIWDCLT-----SQDCVDLVHLGLR----LNEISSRIIDVCCAPT----GCDNMSIVVVALL----    
 3 swiss|Q09172|P2C2_SCHPO  54.4%     ----RISMEDAHCALLNFT----TSFFGVFDGHG-----GDRVAKYCRQHLPDIIKS----SGCTATTALIVD----QVIYCANAGDSRTVLGR-----KGTAEPLSFDHKPNND-----VEKARITAAGGFIDFG-----RVNGSLALSRAIGDFEYKK----FPDVVIHNID------PDDEFLILACDGIWDCKS-----SQQVVEFVRRGIV----LEVICENLMDRCIASN----GCDNMTICIVAFL----    
 4 swiss|Q09173|P2C3_SCHPO  56.9%     ----RISMEDAHSAILSME----VDFFAVYDGHG-----GDKVAKWCGSNLPQILEK----SGCTATVVLRVG----NKLYCANAGDSRTVLGS-----KGIAKPLSADHKPSNE-----AEKARICAAGGFVDFG-----RVNGNLALSRAIGDFEFKN----LPDVVVHEIT------DDDEFVVLACDGIWDCKT-----SQQVIEFVRRGIV----LEKIAENLMDNCIASD----GCDNMTVCIVALL----    
 5 T23F11_1/CAEEL           47.7%     ----RVDMEDAHTHLLSLP----CAFFAVYDGHG-----GSKVSQYSGINLHKKVVA----SGTTAVVVLIKE----GDVYCGNAGDSRAVSSV-----VGEARPLSFDHKPSHE-----TEARRIIAAGGWVEFN-----RVNGNLALSRALGDFAFKN----FPDVITDKLT------PDHEFIVLACDGIWDVMT-----NQEVVDFVREKLA----PQSICEELLTRCLAPD----GCDNMTVVLVGLL----    
 6 F42G9_6/CAEEL            42.6%     ----RVNQEDAHNCVVDLH----WHMFGVYDGHG-----GTEVSKFTSAKLPDFLKE----SGTTACVCLVGK----DKVIVANAGDSRAVLCR-----NGKAVDLSVDHKPEDE-----VETNRIHAAGGQIEDG-----RVNGGLNLSRAFGDHAYKK----LPDVKIEALT------PEDEFIVVACDGIWNSME-----SQQVVDFVRDLLA----CAEVCDALCDACLADS----GCDNMTVICTTFD----    
 7 P2C/PARTE                44.1%     ----RNTMEDAHIHRHDII----VSVFGVFDGHG-----GREVAQFVEKHFVDELLK----AGCTANVALIYK----NTLYVANAGDSRSVLCR-----NNTNHDMSVDHKPDNP-----EEKSRIERAGGFVSDG-----RVNGNLNLSRALGDLEYKR----LPDVKKTELT------PQDKFILMGCDGVFETLN-----HQELLKQVNSTIG----LKKAAEDLLDQLLAPD----GCDNMTTILVYLR----    
 8 YBX5_YEAST               39.8%     ----RLTQEDAHLIRNENS----LNVFAVFDGHG-----GDDCSKFLSGGRHHRDGN----CGSTAVVACIIN----ESLYVANCGDSRCILSSK----SNGIKTMSFDHKPQHI-----GELIRINDNGGTVSLG-----RVGGVLALSRAFSDFQFKR----EPDVLMHKID-----YSKDEFLVLACDGIWDIYN-----NKQLIHFIKYHLV----LDTIITKLLDHGIAQA----GFDNMTAIIVVLN----    
 9 swiss|P20650|P2CA_RAT    38.5%     ----RVEMEDAHTAVIGLP----WSFFAVYDGHA-----GSQVAKYCCEHLLDHITN----SGSTAVGVLISP----QHTYFINCGDSRGLLCR-----NRKVHFFTQDHKPSNP-----LEKERIQNAGGSVMIQ-----RVNGSLAVSRALGDFDYKC----EPEVHDIERS-----EEDDQFIILACDGIWDVMG-----NEELCDFVRSRLE----LEKVCNEVVDTCLYKG----SRDNMSVILICFP----    
10 swiss|P35815|P2CB_RAT    39.5%     ----RVEMEDAHTAVVGIP----WSFFAVYDGHA-----GSRVANYCSTHLLEHITT----SGSTAVGVMISP----THIYFINCGDSRAVLCR-----NGQVCFSTQDHKPCNP-----MEKERIQNAGGSVMIQ-----RVNGSLAVSRALGDYDYKC----EPEVYEILRA------EEDEFVVLACDGIWDVMS-----NEELCEFVNSRLE----LENVCNWVVDTCLHKG----SRDNMSIVLVCFA----    
11 P2CA/ARATH               39.9%     ----RRDMEDAVSIHPSFL----HHFYGVFDGHG-----CSHVAEKCRERLHDIVKK----VGSTAVVSVVTP----EKIIVSNCGDSRAVLCR-----NGVAIPLSVDHKPDRP-----DELIRIQQAGGRVIYWDG--ARVLGVLAMSRAIGDNYLKP----DPEVTVTDRT------DEDECLILASDGLWDVVP-----NETACGVARMCLR----CSDAALLLTKLALARQ----SSDNVSVVVVDLR----    
12 ABI1/ARATH               37.4%     ----RPEMEDAVSTIPRFL----AHFFGVYDGHG-----GSQVANYCRERMHLALAE----VGSTSVVAVVFP----SHIFVANCGDSRAVLCR-----GKTALPLSVDHKPDRE-----DEAARIEAAGGKVIQWNG--ARVFGVLAMSRSIGDRYLKP----DPEVTAVKRV------KEDDCLILASDGVWDVMT-----DEEACEMARKRIL----AMSAAEYLSKLAIQRG----SKDNISVVVVDLK----    
13 swiss|P36982|P2C_LEICH   33.2%     ----RETMEDAHLTYLTDS----WGFFGVFDGHV-----NDQCSQYLERAWRSAIEK----GGSTGTFFVALK----VHLQVGNVGDSRVVACI-----DGVCVPLTEDHKPNNE-----GERQRIENCAGRVENN-----RVDGSLAVSRAFGDREYKL----LADVQHKDFT-----FDSNDFVLLCCDGVFEGNF----PNEEVVAYVKQQLE----LAEVAGRVCEEAIERG----SRDNISCMIVQFK----    
14 RSC454_1/HUMAN           32.8%     ----RRKMEDRHVSLPSFN----RAYFAVFDGHG-----GVDAARYAAVHVHTNAAR----SGTTGVCALIAG----ATLHVAWLGDSQVILVQ-----QGQVVKLMEPHRPERQ-----DEKARIEALGGFVSHMDC--WRVNGTLAVSRAIGDVFQKP----EADAASRALT------GSEDYLLLACDGFFDVVP-----HQEVVGLVQSHLT----SGLRVAEELVAAARER----SHDNITVMVVFLR----    
15 FEM2/CAEEL               27.6%     ----RHKQEDRFLAYPNGQ----ISVLAVFDGHG-----GHECSQYAAGHLWETWLE----GGSTAVCCAIDM----KLMALAWLGDSPGYVMS-----NIEFRQLTRGHSPSDE-----REARRVEEAGGQLFVIGGE-LRVNGVLNLTRALGDVPGRP----EPETCQVPIE------SSDYLVLLACDGISDVFN-----ERDLYQLVEAFAN----DYAELSRFICTKAIEA----SADNVSVVIGFLR----    
16 swiss|P35182|P2C_YEAST   35.6%     ----RRTMEDVHTYVKNFA----WGYFAVFDGHA-----GIQASKWCGKHLHTIIEQ----SGCTAAVCVLRW----RKLYTANVGDSRIVLFR-----NGNSIRLTYDHKASDT-----LEMQRVEQAGGLIMKS-----RVNGMLAVTRSLGDKFFDS----SPFTTSVEIT------SEDKFLILACDGLWDVID-----DQDACELIKDITE----PNEAAKVLVRYALENG----TTDNVTVMVVFL-----    
17 swiss|P40371|P2C1_SCHPO  34.9%     ----RRSMEDTHICLYDFG----DGFVAVYDGHA-----GIQASDYCQKNLHKVLLE----CGCTAAVAFFRY----RVLYTANAGDARIVLCR-----DGKAIRLSYDHKGSDA-----NESRRVTQLGGLMVQN-----RINGVLAVTRALGDTYLKE----HPFTTETRIW-----NGHDEFFIIACDGLWDVVS-----DQEAVDFVRNFVS----PREAAVRLVEFALKRL----STDNITCIVVNLT----    
18 P2C/GIALA                34.0%     ----RKQMEDVCVMIDKLG----TGFFAIYDGHG-----GQEAARIAGDNLHRYLLE----VGCTALIALVTK----YTIEFASVGDSRAVISI-----NGTAYRCTEDHKASDK-----LEIDRIKSLGGTVIFG-----RVNGFISVSRTLGDHCIKN----TPDSVGVTAS---STNELDEFIIMACDGVWDVVT-----DQQSVDTVRKCLK----PQKAAFELKNLAIRSG----TQDNVSVLVLLLR----    
19 swiss|P46014|KAPP_ARATH  31.2%     ----KLPMEDVCHYKWPLP----FGLFCVCDGHG-----GSGAAQSAIKIIPEVLAN----EGCTATVLLVWK----FFAQCANLGDSACVIHL-----GGRYIQMTEDHRVVSL-----SERKRFQEAGLALRDGE---TRLFG-INLARMLGDKFPKQ----EPYISEPLRI---DQSSKDVFAVLASDGLWDVVS-----PKKAVQLVLQMRD----AEKIANGLLNEARAMR----TKDNTSIIYLDFD----    
20 PPH1/ARATH               32.0%     ----QYEMEDDIVIRSDAV----FSYAAVFDGHA-----GSSSVKFLREELYKECVG----SGSTATVMIIRN----DVSFIAHIGDSCAVLSR-----SGQIEELTDYHRPYGSSRAAIQEVKRVKEAGGWIVNG-----RICGDIAVSRAFGDIRFKT----TPDIFQVPLT------SDVEFIILASDGLWDYMK-----SSDVVSYVRDQLR----VQLACESLAQVALDRR----SQDNISIIIADLG----    
21 swiss|P35816|PDP_BOVIN   25.2%     ----NAPIEDRRSAATCLQ----GMLLGVFDGHA-----GCACSQAVSERLFYYIAV----SGATACVAHVDG----VDLHVANTGDSRAMLGVQEEDGSWSAVTLSNDHNAQNERE---VERLKLEHPKNEAKSVVKQD-RLLGLLMPFRAFGDVKFKW----EPEVTYHRLR------PQDKFLVLATDGLWETMH-----RQDVVRIVGEYLT----DQNAATHLIRHAVGNN----YRDDITIIVVQFN----    
22 PDP/YEAST                24.3%     ----NHPIEDDHVEQIITI----LYFFGIFDGHG-----GPFTSEKLSKDLVRYVAY----SGSCALLSLYNS----SILKVAVTGDSRALICGLDNEGNWTVKSLSTDQTGDNLDE---VRRIRKEHP--GEPNVIRNG-RILGSLQPSRAFGDYRYKI----EPVITSAKIG------ENTKFMVMGSDGLFELLT-----NEEIASLVIRWMD----DKNVATHLIRNALS------YRDDLTVTVAFFG----    
23 swiss|P25646|YCW9_YEAST  26.0%     ----RLENQDNYSIKMMRS----ALNCSVFDGHGEK---GAQLSQLLADKLCSSLDF----AGSTASSIFLYP----LKLIVTQVGDSKIILCDQ----DGIAHALTTTHHINSS-----RERHRLSIDPSRLDPDAFGETRFLNNFANTRSFGDVAGKP----LPRSERSKLP----FNGDECFLALVTDGITNKLA-----DQEVVDLITSTVN----LKKATPQFVAEETIKF----HSDNATCVVVRLS----    
24 SLRD_24/SYNY             20.6%     ----RDHNEDACFPVSETP----NTMTLICDGVG-----GQEGGEIASQWVIEHLPV----MGTTLVMALADF----QQFFLANVGDSRCYWLT-----ADSCKQVTVDDDV---------ASREVRLGLMLYRHAVEL--PRSGALTQAVGLGPSAQL-----HPIIQRLIVP-------TDCLFLLCSDGFCDYNR----VEQYWQDDFLPVLQ----VAEAVPRLIELANQVN----GHDNVSVALIHCQ----    
25 swiss|P47354|Y108_MYCGE  14.6%     ----RKENQDFYGFSFNQN----NLLIVVCDGLG-----GYKGGKIASNLVGKLFLS----MASTLVLGILTK----SDIYIFWIGDSRAYLLF-----ENQAKLVTKDHNL---------YNQLVAMNADEKLLLSYS--NQLLALTNTISKETK--------RPLVYGFYNT----KIEQQEFLLLCSDGLYNFVE------KELFFEIITNSK----LKQAVFNLYRKSIENA----SNDNITAALVNLQ----    
26 swiss|P38797|YHN6_YEAST  18.8%     ----SPTGEDNYFVTSNNV----DIFAGVADGVG-----GWAEHGYDSSAISRELCK----GGTTAIVAHFPS----GKLEVANLGDSWCGVFR-----DSKLVFQTKFQTVGFN-----APYQLSIIPEEMLKEAER---RGSKYILNTPRDADEYSFQ----KKDIIILATDGVTDNIATDDIELFLKDNAARTNDELQLLSQKFVDNVVSLSK----PSVFAQEISKLTGKNY----KEDDITVVVVRVD----    
27 swiss|P23466|CYAA_SACKL  25.7%     ----SVCSRDVTFERFRGR----ECLICLYDGKNENASSGHKISKIIRDIYDKILIR----SGSSATVVYLKG----KKIYTANIGDTMAVLSK----NNGDFVTLTKLHVPAER-----EEYERIRTSGGYVNN-----QKLDGVSEVSRAVGFFDLLP----SPDISETVLS------YSDEMLIIATHKLWEYLD-----YETVCDISRENKS----PMSAAEKMKDYAISYG----CSDNITILCVSLD----    
28 swiss|P08678|CYAA_YEAST  24.3%     ----YVSSRDVTFERFRGN----ECLLCLHDSKNQNADYGHNISRIVRDIYDKILIR----SGACSTVIYIRG----KKLFAANLGDCMAILSK----NNGDYQTLTKQHLPTKR-----EEYERIRISGGYVNN-----GKLDGVVDVSRAVGFFDLLP----SPDISVVTLT------KADEMLIVATHKLWEYMD-----VDTVCDIARENST----PLRAAAELKDHAMAYG----CTENITILCLALY----    
29 UAC1/USTMA               26.8%     ----NLSVIDLVIPTFRKD----ECIFGLFDGRG----HGAHVGSRIAHHLAEWSGH----AGASAILAYVVD----HTLYIANAGDALAVMSR----NGGTAHLISNKHEPFDR-----AEIERIRSAEGWVSLR----GYVNDMLDVSRSFGYFHLFP----APAVTTVQLT------DSDEFVIIANRTLWQYVS-----YQTAVDIARTQRN----PMIAAQKLRDFAISYG----AEESIMVMVISVG----    
30 swiss|Q01631|CYAA_NEUCR  29.4%     ----HLSLFDLVVPRLGSV----DTLVALFDGKE-LSTGGSKIAKFLYEEFSRLFIL----SGCVATVAYLSE----LKLYVANVGDVQGMLIQ----ANGSFKMLTKKHDPADP-----VERSRIRNAGGWVSRN----GRLNDVLNVSRAFGYTELLP----APDITEHTID------DKDETVLIASKELWEHLR-----PELIVDVARECRS----LMKASQKLRDLAIAYG----STNKLLIMMIGVA----    
31 swiss|P14605|CYAA_SCHPO  22.4%     ----VISACELVVNNFLHP----SSLYCVLDSDI-SAGKNNRVLKFVYDNLASCLAH----IGVSIILVYVRD----TRAFVANVGTSMAIMSTR---NDSEPTTLSVMHDVYNR-----DEIRRIVDSCGFISG--------EIKSTTTRAIGRLSQFP----VPYVNVQYLS------ELNEFIILANQEFWSVLS-----KRTVIDVVRANRH----PLLASTKLRDYAIAYG----AEKNVLVVIVELN----    
32 swiss|Q09564|YR71_CAEEL  23.4%     ----NLFGFQIGVSGSRGM----ENTFGFIDGGS-----NSYMSSSICRFMTSYLKE----LGASVMIIRVHE----KRLEIASTGTMSAAIAR-----NQKLKMIINGRYEIDD-----DEYSRIREAHGFVDEEN----RINGVIGSSRQIGHFSTFP----LPTHSYRNIQ----LNEQIEGLIVGNNMIWNMLS-----IDDLNSTFHNNRS----PIVVAKKIQDQLQSYD----GNSNILVLRRIKP----    
33 SP2E/BACME               12.6%     ----GFVSGDSYSMIELNA----KYALAISDGMG-----NGERAHYESSETLQLLKQ----IFSTLDLAMIDL----ANVNFLKIGSTPSFIKRG---------------------------------------------DKVIKIQASNLPMGIIEEF-----EVDVVNEQMK-------AEDLLIMMSDGVFEGPK----HVENYEMWMKRKIG----PQEIADLIMEEVIRTK----IEDDMTVVVAKLQ----    
34 swiss|P37475|SP2E_BACSU  12.6%     ----GLVSGDSYSMMELGA----KYAAAISDGMG-----NGARAHFESNETIKLLEK----IYSTLDLSIIDL----ASCKFLKVGSTPSFIKRG---------------------------------------------DQVMKVQASNLPIGIINEF-----DVEVVSEQLK-------AGDLLIMMSDGIFEGPK----HVENHDLWMKRKMK----PQEIADLLMEEVIRTR----IEDDMTVVVVRID----    
35 swiss|P37979|ICFG_SYNY3  11.4%     ----RSVSGDFYDAFLLGD----YLAMSIGDVCDK--GVGAAMFMGLFRSLLRVFSG----MFATLFFGVIDI----GNLSYINAGHEPVFILN------------------------------------------------SEGIKHRLKSTGPAVGM-----MPNSTFTIDS---LKIDPGEMLIGYTDGVTDARS----PTKEFFGRQRLMET----KTEILDIIKQELIGHI----QFDDITMIAVYRN----    
36 swiss|P40399|RSBU_BACSU  11.0%     ----KQMSGDYYHFVKDKE----SINIAIADVIG-----KGIPAALCMSMIKYAMDS----MFITMFYANYNM----HQFTYASAGHEPGFYYSQ-----------------------------------------------KDNTFYDLEAKGLVLGI-----SQDYDYKQFD---QHLEKGDMIVLFSDGVTECRT---ENGFLERPDLQKLIE----AQEMVKNIYDSLLKLQ----LQDDFTLIVLRRK----    
37 swiss|P17906|RSBX_BACSU  10.8%     ----KSICGDSFFMKADDK----ELICAVADGLG-----SGSLANESSAAIKDLVEN----RGATASILKINF----RQFTYCSVGNVRFILHS-----------------------------------------------PSGESFYPLPISGYLSGKP----KYKTHTATYE-------KGSKFIIHTDGLNVP---------DIRSHLK--------KGQSVEEISNSLKMYT----RKDDLTYILGQLS----    
   consensus/100%                         .....p.h.......    ...h.h.Ds.......t..........h......    .h.s.....h..    ....h...Gp...h..............................................................t......    ....................h.hhhpp.h.......................    ................    ..pph.h.hh.h.        
   consensus/90%                          t...tD.h.......    ..hhslhDuhs.....s.thsph..t.h.p.h..    .hsoh.hhhh..    ..h.hh.hGss.hhh...   .................     ................... ....t.....h.hG.h..h.    .s.h....h.   ....ttphhlhhscthhph..    ..pph...h.....    ...hs..h.p.hh...    .p-sh.hhhh.h.        
   consensus/80%                          p...tD.h..h.th.    ..hhulhDGtu     utthuphhtpth.phh.t    .GsTshhhhl..    t.hhhsshGDs.shl.p.    t.....ho..c.....     .t..ch......h.....  .ph.s.hs.s+uhG.h..h.    .Pth..h.hp    ...pschlllssDGlachhp     .pphhthhpt.ht    ..thsttlhp.sht.t    tpDshohhll.h.        
   consensus/70%                          +hp.cDshhhh.ph.    .thhulaDG+u     Gspsuphhtpplhphltp    sGsTuslshlt.    tplhhussGDSpslltp     ssphh.ho.tHps.p.     .EhtRlptssuhl....   .RlsGslshoRuhGchthh.    .Pclh.hths     .tp--hlllusDGla-shs     spphsphlcphhp    .tphspplhc.slt.t    spDNholllltht        

MView 1.39, Copyright © Nigel P. Brown, 1997-1999.